While it's a bit long, the video Evolution is a Blind Watchmaker (link via Jason Kottke) is a facinating look at evolution and a rather neat argument against Intelligent Design, showing how clocks could evolve, assuming the parts that make up a clock were all swimming around and actually had an affinity to combine.
And if simulated universes with evolving clocks isn't your thing, how about a few physics lectures by the late and great Richard Feynman.
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